Table of contents

• How to update the publication page?
• How to update the resource pages?

How to update the publication page?

1. The publications are fetched from PubMed. Search the name (Niranjan Nagarajan) and save the results to a summary file by clicking the Save button on the top left, and select to save all the abstracts.

   

   A file named abstract-NiranjanNa-set.txt will be downloaded. Copy this file to publications/ in this code repository. You can also update the existing abstract file publications/abstract-NiranjanNa-set.txt by simply copy and pasting the new abstract to the beginning of the file.

2. Run the python script to convert the abstracts to a YML file. Under the root directory of this repository, run

   python publications/pubmed_abstracts_to_yml.py
   

   The output YML file will be in _data/publications.yml. The keyword tags are automatically assigned based on the abstract of each article, using the kwmap variable in the script pubmed_abstracts_to_yml.py.

How to update the resource page?

The resources are currently hard-coded and have to be updated manually. The related data are located in

   _data/resources/software.yml
   _data/resources/pipelines.yml
   _data/resources/scripts_datasets.yml

and the corresponding webpages are located in

   _pages/software.html
   _pages/pipelines.html
   _pages/scripts_datasets.html

Update the YML file (following the existing examples) to update the corresponding webpage.