Nagarajan Lab
  • Software

  • OPERA-LG: Genome Scaffolder

  • Features: Robust & Efficient, Handles Repeats, Matepairs+Long-reads
  • Wiki: Link
  • SourceForge: Download

  • LoFreq: High Sensitivity Variant Caller

  • Features: SNPs+Indels, Fast, Rare variants (<1%)
  • Github: Webpage & Blog
  • SourceForge: Download