Release of 2.1.1 (bug fix release)
19 Dec 2014A last minute bug sneaked into version 2.1.0 (just released yesterday). It was
triggered when calling SNVs and indels simultaneously with lofreq
call
(not somatic
) and would have resulted in a segfault in most
cases (at the automatically run filtering stage).
The actual reason was broken indexing during the FDR correction for strand-bias filtering when indels and SNVs where present in the same vcf file. The somatic pipeline was not affected by this because it keeps separate files for SNVs and indels.
Andreas