Alpha testers for release 2.1 needed

We are looking for people interested in testing the current alpha for LoFreq version 2.1. This version includes the ability to call (short) indels. Please send an email to me if you are interested, and indicate operating system (if you need binaries) and a brief explanation of what you’re trying to do, so that we can give specific advice.

Once we get positive feedback, source-code and binaries will be released publicly here.

Andreas

PS: We assume you already have BAM files (created with BWA or BWA-MEM), duplicates were removed, indels were realigned and base-qualities recalibrated (with GATK>=2).